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TitleMechanistic insight into 3-methylmercaptopropionate metabolism and kinetical regulation of demethylation pathway in marine dimethylsulfoniopropionate-catabolizing bacteria.
Journal, issue, pagesMol. Microbiol., Vol. 111, Page 1057-1073, Year 2019
Publish dateSep 30, 2018 (structure data deposition date)
AuthorsShao, X. / Cao, H.Y. / Zhao, F. / Peng, M. / Wang, P. / Li, C.Y. / Shi, W.L. / Wei, T.D. / Yuan, Z. / Zhang, X.H. ...Shao, X. / Cao, H.Y. / Zhao, F. / Peng, M. / Wang, P. / Li, C.Y. / Shi, W.L. / Wei, T.D. / Yuan, Z. / Zhang, X.H. / Chen, X.L. / Todd, J.D. / Zhang, Y.Z.
External linksMol. Microbiol. / PubMed:30677184
MethodsX-ray diffraction
Resolution2.111 - 2.3 Å
Structure data

PDB-6ihk:
Structure of MMPA CoA ligase in complex with ADP
Method: X-RAY DIFFRACTION / Resolution: 2.23 Å

PDB-6ijb:
Structure of 3-methylmercaptopropionate CoA ligase mutant K523A in complex with AMP and MMPA
Method: X-RAY DIFFRACTION / Resolution: 2.111 Å

PDB-6ijc:
Structure of MMPA-CoA dehydrogenase from Roseovarius nubinhibens ISM
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-HOH:
WATER

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-B3P:
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-A8C:
3-(methylsulfanyl)propanoic acid

Source
  • ruegeria lacuscaerulensis (strain dsm 11314 / kctc 2953 / iti-1157) (bacteria)
  • roseovarius nubinhibens ism (bacteria)
KeywordsLIGASE / CoA ligase / ATP dependent / dimer / comformational change / OXIDOREDUCTASE / Short-chain acyl CoA dehydrogenase / FAD / redox reaction

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