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Structure paper

TitleMechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Journal, issue, pagesNucleic Acids Res., Vol. 47, Page 2089-2100, Year 2019
Publish dateDec 3, 2018 (structure data deposition date)
AuthorsMelnikov, S.V. / Khabibullina, N.F. / Mairhofer, E. / Vargas-Rodriguez, O. / Reynolds, N.M. / Micura, R. / Soll, D. / Polikanov, Y.S.
External linksNucleic Acids Res. / PubMed:30520988
MethodsX-ray diffraction
Resolution3.7 Å
Structure data

PDB-6n9e:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
Method: X-RAY DIFFRACTION / Resolution: 3.7 Å

PDB-6n9f:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Method: X-RAY DIFFRACTION / Resolution: 3.7 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-HOH:
WATER

Source
  • escherichia coli (E. coli)
  • thermus thermophilus (bacteria)
  • enterobacteria phage t4 (virus)
KeywordsRIBOSOME / D-amino acids / ribosome structure / peptidyl transferase center / expanded genetic code / ribosome engineering

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