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Structure paper

TitleSeveral structural motifs cooperate in determining the highly effective anti-thrombin activity of NU172 aptamer.
Journal, issue, pagesNucleic Acids Res., Vol. 46, Page 12177-12185, Year 2018
Publish dateNov 2, 2017 (structure data deposition date)
AuthorsTroisi, R. / Napolitano, V. / Spiridonova, V. / Russo Krauss, I. / Sica, F.
External linksNucleic Acids Res. / PubMed:30357392
MethodsX-ray diffraction
Resolution2.5 - 2.8 Å
Structure data

PDB-6evv:
X-ray structure of the complex between human alpha thrombin and NU172, a duplex/quadruplex 26-mer DNA aptamer, in the presence of potassium ions.
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6gn7:
X-ray structure of the complex between human alpha thrombin and NU172, a duplex/quadruplex 26-mer DNA aptamer, in the presence of sodium ions.
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-0G6:
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

ChemComp-NA:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsHYDROLASE / Thrombin-DNA / G-quadruplex / Aptamer / Duplex/Quadruplex

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