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Structure paper

TitleMechanistic Exploitation of a Self-Repairing, Blocked Proton Transfer Pathway in an O2-Tolerant [NiFe]-Hydrogenase.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 140, Page 10208-10220, Year 2018
Publish dateAug 22, 2016 (structure data deposition date)
AuthorsEvans, R.M. / Ash, P.A. / Beaton, S.E. / Brooke, E.J. / Vincent, K.A. / Carr, S.B. / Armstrong, F.A.
External linksJ. Am. Chem. Soc. / PubMed:30070475
MethodsX-ray diffraction
Resolution1.05 - 1.6 Å
Structure data

PDB-5lry:
E coli [NiFe] Hydrogenase Hyd-1 mutant E28D
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6fpi:
Structure of fully reduced Hydrogenase (Hyd-1) variant E28Q
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6fpo:
High resolution structure of native Hydrogenase (Hyd-1)
Method: X-RAY DIFFRACTION / Resolution: 1.05 Å

PDB-6fpw:
Structure of fully reduced Hydrogenase (Hyd-1)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-6g7r:
Structure of fully reduced variant E28Q of E. coli hydrogenase-1 at pH 8
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-6gal:
Structure of fully reduced Hydrogenase (Hyd-1) variant E28Q collected at pH 10
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-6gam:
Structure of E14Q variant of E. coli hydrogenase-2 (as-isolated enzyme)
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6gan:
Structure of fully reduced Hydrogenase (Hyd-2) variant E14Q
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-SF3:
FE4-S3 CLUSTER

ChemComp-LMT:
DODECYL-BETA-D-MALTOSIDE / detergent*YM

ChemComp-CL:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-FCO:
CARBONMONOXIDE-(DICYANO) IRON

ChemComp-NI:
NICKEL (II) ION

ChemComp-MG:
Unknown entry

ChemComp-LI:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-EJ2:
NI-FE REDUCED ACTIVE CENTER

ChemComp-CXS:
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID / pH buffer*YM

Source
  • escherichia coli o6:h1 (strain cft073 / atcc 700928 / upec) (bacteria)
  • escherichia coli (strain k12) (bacteria)
  • escherichia coli k-12 (bacteria)
  • escherichia coli cft073 (bacteria)
  • escherichia coli k12 (bacteria)
KeywordsOXIDOREDUCTASE / [NiFe]-Hydrogenase Hydrogen splitting Oxidoreductase / NiFe hydrogenase / Iron sulphur cluster / periplasm / hydrogen / [NiFe]-Hydrogenase / proton transfer / FeS clusters / hydrogen oxidation

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