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Structure paper

TitleNitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Journal, issue, pagesBiochemistry, Vol. 57, Page 4788-4802, Year 2018
Publish dateFeb 14, 2017 (structure data deposition date)
AuthorsWang, B. / Shi, Y. / Tejero, J. / Powell, S.M. / Thomas, L.M. / Gladwin, M.T. / Shiva, S. / Zhang, Y. / Richter-Addo, G.B.
External linksBiochemistry / PubMed:29999305
MethodsX-ray diffraction
Resolution1.64 - 1.85 Å
Structure data

PDB-5ut7:
Wild-type sperm whale myoglobin with nitrite
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5ut8:
Deoxy form of sperm whale myoglobin H64A
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-5ut9:
Sperm whale myoglobin H64A with nitrite
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5uta:
Sperm whale myoglobin H64Q with nitrite
Method: X-RAY DIFFRACTION / Resolution: 1.81 Å

PDB-5utb:
Met form of sperm whale myoglobin V68A/I107Y
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-5utc:
Deoxy form of sperm whale myoglobin V68A/I107Y
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5utd:
Sperm whale myoglobin V68A/I107Y with nitrite
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-5vzn:
Wild-type sperm whale myoglobin with nitric oxide
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-5vzo:
Sperm whale myoglobin H64A with nitric oxide
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-5vzp:
Sperm whale myoglobin H64Q with nitric oxide
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-5vzq:
Sperm whale myoglobin V68A/I107Y with nitric oxide
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-6cf0:
Sperm Whale Myoglobin H64V Mutant with Nitrite
Method: X-RAY DIFFRACTION / Resolution: 1.64 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE / Heme B

ChemComp-NO2:
NITRITE ION / Nitrite

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-HOH:
WATER / Water

ChemComp-NO:
NITRIC OXIDE / Nitric oxide

Source
  • physeter catodon (sperm whale)
KeywordsOXYGEN TRANSPORT / Heme / Myoglobin / Nitrite / Nitrosyl / Nitric oxide / Hydrophilic orientation / Deoxy / OXYGEN STORAGE / sperm whale

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