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Structure paper

TitleIntramolecular H-bonds govern the recognition of a flexible peptide by an antibody
Journal, issue, pagesJ. Biochem., Vol. 164, Page 65-76, Year 2018
Publish dateSep 11, 2017 (structure data deposition date)
AuthorsMiyanabe, K. / Akiba, H. / Kuroda, D. / Nakakido, M. / Kusano-Arai, O. / Iwanari, H. / Hamakubo, T. / Caaveiro, J.M.M. / Tsumoto, K.
External linksJ. Biochem. / PubMed:29924367
MethodsX-ray diffraction
Resolution1.35 - 1.96 Å
Structure data

PDB-5yd3:
Crystal structure of the scFv antibody 4B08 with epitope peptide
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-5yd4:
Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation T6A)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-5yd5:
Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation N3A)
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

Source
  • mus musculus (house mouse)
  • homo sapiens (human)
KeywordsIMMUNE SYSTEM / Antibody / Biomolecular recognition / MD simulations / Thermodynamics

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