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Structure paper

TitleStructural basis of pyrrole polymerization in human porphobilinogen deaminase.
Journal, issue, pagesBiochim Biophys Acta Gen Subj, Vol. 1862, Page 1948-1955, Year 2018
Publish dateOct 25, 2016 (structure data deposition date)
AuthorsPluta, P. / Roversi, P. / Bernardo-Seisdedos, G. / Rojas, A.L. / Cooper, J.B. / Gu, S. / Pickersgill, R.W. / Millet, O.
External linksBiochim Biophys Acta Gen Subj / PubMed:29908816
MethodsX-ray diffraction
Resolution2.73 - 2.78 Å
Structure data

PDB-5m6r:
Human porphobilinogen deaminase in complex with reaction intermediate
Method: X-RAY DIFFRACTION / Resolution: 2.73 Å

PDB-5m7f:
Human porphobilinogen deaminase in complex with DPM cofactor
Method: X-RAY DIFFRACTION / Resolution: 2.78 Å

Chemicals

ChemComp-7J8:
3-[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-3-(3-hydroxy-3-oxopropyl)-5-methyl-1~{H}-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-1~{H}-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-1~{H}-pyrrol-2-yl]methyl]-1~{H}-pyrrol-3-yl]propanoic acid

ChemComp-PO4:
PHOSPHATE ION

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-DPM:
3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid

ChemComp-SO4:
SULFATE ION

Source
  • homo sapiens (human)
KeywordsTRANSFERASE / Porphobilinogen deaminase / heme biosynthesis / porphyria / HMBS

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