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Structure paper

TitleCrystal structures of the kinase domain of PpkA, a key regulatory component of T6SS, reveal a general inhibitory mechanism.
Journal, issue, pagesBiochem. J., Vol. 475, Page 2209-2224, Year 2018
Publish dateJan 19, 2016 (structure data deposition date)
AuthorsLi, P.P. / Xu, D.Q. / Ma, T.Q. / Wang, D.Y. / Li, W.D. / He, J.H. / Ran, T.T. / Wang, W.W.
External linksBiochem. J. / PubMed:29858276
MethodsX-ray diffraction
Resolution1.41 - 1.602 Å
Structure data

PDB-5hnv:
Crystal structure of PpkA
Method: X-RAY DIFFRACTION / Resolution: 1.41 Å

PDB-5x1q:
PpkA-294 with ATP and MnCl2
Method: X-RAY DIFFRACTION / Resolution: 1.602 Å

PDB-5x1r:
PpkA-294 apo form
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5x1s:
PpkA-294 with Amppcp
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

PDB-5x1t:
PpkA-294
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-ACP:
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER / AMP-PCP, energy-carrying molecule analogue*YM

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

Source
  • serratia sp. fs14 (bacteria)
KeywordsTRANSFERASE / Kinase / complex / t6ss / ATP / Mg / Kinase domain

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