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TitleTwo Distinct Mechanisms for C-C Desaturation by Iron(II)- and 2-(Oxo)glutarate-Dependent Oxygenases: Importance of alpha-Heteroatom Assistance.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 140, Page 7116-7126, Year 2018
Publish dateMay 2, 2018 (structure data deposition date)
AuthorsDunham, N.P. / Chang, W.C. / Mitchell, A.J. / Martinie, R.J. / Zhang, B. / Bergman, J.A. / Rajakovich, L.J. / Wang, B. / Silakov, A. / Krebs, C. ...Dunham, N.P. / Chang, W.C. / Mitchell, A.J. / Martinie, R.J. / Zhang, B. / Bergman, J.A. / Rajakovich, L.J. / Wang, B. / Silakov, A. / Krebs, C. / Boal, A.K. / Bollinger, J.M.
External linksJ. Am. Chem. Soc. / PubMed:29708749
MethodsX-ray diffraction
Resolution1.7 - 2.1 Å
Structure data

PDB-6daw:
X-ray crystal structure of NapI L-arginine desaturase bound to Fe(II), L-arginine, and acetate
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6dax:
X-ray crystal structure of VioC bound to Fe(II), L-homoarginine, and 2-oxoglutarate
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6daz:
X-ray crystal structure of VioC bound to Fe(II), 3S-hydroxy-L-homoarginine, and succinate
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-6db2:
X-ray crystal structure of VioC bound to vanadyl ion, L-homoarginine, and succinate
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-ARG:
ARGININE

ChemComp-ACT:
ACETATE ION

ChemComp-HOH:
WATER

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-HRG:
L-HOMOARGININE

ChemComp-SIN:
SUCCINIC ACID

ChemComp-G3M:
(3S)-N~6~-carbamimidoyl-3-hydroxy-L-lysine

ChemComp-VVO:
oxovanadium(2+)

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • streptomyces lusitanus (bacteria)
  • streptomyces vinaceus (bacteria)
KeywordsOXIDOREDUCTASE / desaturase / oxygenase / metalloenzyme / desaturation / natural products / biosynthesis / hydroxylase / hydroxylation / viomycin

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