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Structure paper

TitleStaphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
Journal, issue, pagesJ. Biol. Chem., Vol. 293, Page 8009-8019, Year 2018
Publish dateJan 12, 2018 (structure data deposition date)
AuthorsMcFarlane, J.S. / Davis, C.L. / Lamb, A.L.
External linksJ. Biol. Chem. / PubMed:29618515
MethodsX-ray diffraction
Resolution1.94 - 2.49 Å
Structure data

PDB-6c4l:
Yersinopine dehydrogenase (YpODH) - Apo
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6c4m:
Yersinopine dehydrogenase (YpODH) - NADP+ bound
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-6c4n:
Pseudopaline dehydrogenase (PaODH) - NADP+ bound
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-6c4r:
Staphylopine dehydrogenase (SaODH) - Apo
Method: X-RAY DIFFRACTION / Resolution: 2.288 Å

PDB-6c4t:
Staphylopine dehydrogenase (SaODH) - NADP+ bound
Method: X-RAY DIFFRACTION / Resolution: 2.49 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-NAP:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

ChemComp-NA7:
[(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE

Source
  • yersinia pestis (bacteria)
  • pseudomonas aeruginosa pao1 (bacteria)
  • staphylococcus aureus (bacteria)
KeywordsOXIDOREDUCTASE / Opine Dehydrogenase / Metallophore Siderophore / Yersinopine Pseudopaline Staphylopine / Opine Dehydrogenase Metallophore Siderophore / Opine Dehydrogenase Metallophore Siderophore Yersinopine Pseudopaline Staphylopine

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