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Structure paper

TitleArchitecture and hydration of the arginine-binding site of neuropilin-1.
Journal, issue, pagesFEBS J., Vol. 285, Page 1290-1304, Year 2018
Publish dateMar 2, 2016 (structure data deposition date)
AuthorsMota, F. / Fotinou, C. / Rana, R.R. / Chan, A.W.E. / Yelland, T. / Arooz, M.T. / O'Leary, A.P. / Hutton, J. / Frankel, P. / Zachary, I. ...Mota, F. / Fotinou, C. / Rana, R.R. / Chan, A.W.E. / Yelland, T. / Arooz, M.T. / O'Leary, A.P. / Hutton, J. / Frankel, P. / Zachary, I. / Selwood, D. / Djordjevic, S.
External linksFEBS J. / PubMed:29430837
MethodsX-ray diffraction
Resolution1.38 - 2.1 Å
Structure data

PDB-5ijr:
X-ray structure of neuropilin-1 b1 domain complexed with Arg-1 ligand.
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-5iyy:
X-ray structure of neuropilin-1 b1 domain complexed with Arg-4 ligand.
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5j1x:
X-ray structure of neuropilin-1 b1 domain complexed with Arg-5 ligand.
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5jgi:
X-ray structure of neuropilin-1 b1 domain complexed with M45 compound
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-5jgq:
X-ray structure of neuropilin-1 b1 domain complexed with Arg-7 ligand.
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5jhk:
X-ray structure of neuropilin-1 b1 domain complexed with Arg-6 ligand.
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-HRG:
L-HOMOARGININE

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-HOH:
WATER

ChemComp-R40:
N~2~-[(benzyloxy)carbonyl]-L-arginine

ChemComp-AR5:
N~2~-(tert-butoxycarbonyl)-L-arginine

ChemComp-AAG:
N-ALPHA-L-ACETYL-ARGININE

ChemComp-6JY:
N~2~-(benzenecarbonyl)-L-arginine

ChemComp-6K8:
N-(benzenecarbonyl)glycyl-L-arginine

Source
  • homo sapiens (human)
KeywordsSIGNALING PROTEIN / Neuropilin-1 / Angiogenesis

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