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Structure paper

TitleUbiquinone binding site of yeast NADH dehydrogenase revealed by structures binding novel competitive- and mixed-type inhibitors
Journal, issue, pagesSci Rep, Vol. 8, Page 2427-2427, Year 2018
Publish dateOct 11, 2017 (structure data deposition date)
AuthorsYamashita, T. / Inaoka, D.K. / Shiba, T. / Oohashi, T. / Iwata, S. / Yagi, T. / Kosaka, H. / Miyoshi, H. / Harada, S. / Kita, K. / Hirano, K.
External linksSci Rep / PubMed:29402945
MethodsX-ray diffraction
Resolution1.85 - 3.4 Å
Structure data

PDB-5yjw:
Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with the competitive inhibitor, stigmatellin.
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5yjx:
Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with myxothiazol.
Method: X-RAY DIFFRACTION / Resolution: 3.21 Å

PDB-5yjy:
Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with AC0-12.
Method: X-RAY DIFFRACTION / Resolution: 3.4 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-MG:
Unknown entry

ChemComp-PE4:
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL / precipitant*YM

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM

ChemComp-GOL:
GLYCEROL

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-SMA:
STIGMATELLIN A

ChemComp-HOH:
WATER

ChemComp-MYX:
(2Z,6E)-7-{2'-[(2E,4E)-1,6-DIMETHYLHEPTA-2,4-DIENYL]-2,4'-BI-1,3-THIAZOL-4-YL}-3,5-DIMETHOXY-4-METHYLHEPTA-2,6-DIENAMID

ChemComp-8WF:
2-dodecyl-1-oxidanidyl-quinolin-1-ium-4-ol

Source
  • saccharomyces cerevisiae (strain atcc 204508 / s288c) (yeast)
KeywordsOXIDOREDUCTASE / monotopic membrane protein / NUCLEOTIDE-BINDING DOMAIN

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