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TitleDietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides.
Journal, issue, pagesNat Microbiol, Vol. 3, Page 210-219, Year 2018
Publish dateJul 28, 2017 (structure data deposition date)
AuthorsLuis, A.S. / Briggs, J. / Zhang, X. / Farnell, B. / Ndeh, D. / Labourel, A. / Basle, A. / Cartmell, A. / Terrapon, N. / Stott, K. ...Luis, A.S. / Briggs, J. / Zhang, X. / Farnell, B. / Ndeh, D. / Labourel, A. / Basle, A. / Cartmell, A. / Terrapon, N. / Stott, K. / Lowe, E.C. / McLean, R. / Shearer, K. / Schuckel, J. / Venditto, I. / Ralet, M.C. / Henrissat, B. / Martens, E.C. / Mosimann, S.C. / Abbott, D.W. / Gilbert, H.J.
External linksNat Microbiol / PubMed:29255254
MethodsX-ray diffraction
Resolution1.07 - 2.2 Å
Structure data

PDB-5olp:
Galacturonidase
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5olq:
Rhamnogalacturonan lyase
Method: X-RAY DIFFRACTION / Resolution: 1.48 Å

PDB-5olr:
Rhamnogalacturonan lyase
Method: X-RAY DIFFRACTION / Resolution: 1.07 Å

PDB-5ols:
Rhamnogalacturonan lyase
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5opj:
Beta-L-arabinofuranosidase
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-AHR:
alpha-L-arabinofuranose

ChemComp-ZN:
Unknown entry

Source
  • bacteroides thetaiotaomicron (strain atcc 29148 / dsm 2079 / nctc 10582 / e50 / vpi-5482) (bacteria)
  • bacteroides thetaiotaomicron (bacteria)
KeywordsHYDROLASE / Galacturonidase involved in the degradation of dietary pectic glycans in the human gut. / LYASE / Pectin / PL9 / polysaccharide lyase family 9 / Rhamnogalacturonan lyase / endo-acting enzyme / OXIDOREDUCTASE / Beta arbinofuranosidase / arabinan / b theta / rhamnogalacturonan I

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