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TitleNucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Journal, issue, pagesNat Commun, Vol. 8, Page 1575-1575, Year 2017
Publish dateApr 7, 2017 (structure data deposition date)
AuthorsDavey, G.E. / Adhireksan, Z. / Ma, Z. / Riedel, T. / Sharma, D. / Padavattan, S. / Rhodes, D. / Ludwig, A. / Sandin, S. / Murray, B.S. ...Davey, G.E. / Adhireksan, Z. / Ma, Z. / Riedel, T. / Sharma, D. / Padavattan, S. / Rhodes, D. / Ludwig, A. / Sandin, S. / Murray, B.S. / Dyson, P.J. / Davey, C.A.
External linksNat Commun / PubMed:29146919
MethodsX-ray diffraction
Resolution2.6 - 2.87 Å
Structure data

PDB-5xf3:
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration)
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5xf4:
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration)
Method: X-RAY DIFFRACTION / Resolution: 2.87 Å

PDB-5xf5:
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration)
Method: X-RAY DIFFRACTION / Resolution: 2.82 Å

PDB-5xf6:
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having an ethylenediamine linker
Method: X-RAY DIFFRACTION / Resolution: 2.63 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-RUD:
[ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2

ChemComp-RRK:
(1R,2R)-1,2-diphenylethane-1,2-diamine

ChemComp-SO4:
SULFATE ION

ChemComp-SSK:
(1S,2S)-1,2-diphenylethane-1,2-diamine

ChemComp-RSK:
(1S,2R)-1,2-diphenylethane-1,2-diamine

ChemComp-EDN:
ETHANE-1,2-DIAMINE

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
  • xenopus laevis (African clawed frog)
KeywordsSTRUCTURAL PROTEIN/DNA / Nucleosome / Histone adduct / Ruthenium compound / Binuclear metal-based agent / STRUCTURAL PROTEIN-DNA complex

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