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Structure paper

TitleSelective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.
Journal, issue, pagesEMBO J., Vol. 37, Page 63-74, Year 2018
Publish dateApr 13, 2017 (structure data deposition date)
AuthorsShi, R. / Mullins, E.A. / Shen, X.X. / Lay, K.T. / Yuen, P.K. / David, S.S. / Rokas, A. / Eichman, B.F.
External linksEMBO J. / PubMed:29054852
MethodsX-ray diffraction
Resolution1.799 - 2.396 Å
Structure data

PDB-5vhv:
Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an oxocarbenium-intermediate analog
Method: X-RAY DIFFRACTION / Resolution: 1.799 Å

PDB-5vi0:
Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an abasic site analog
Method: X-RAY DIFFRACTION / Resolution: 2.396 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-NA:
Unknown entry

ChemComp-9B4:
(2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol

ChemComp-HOH:
WATER

ChemComp-P4K:
polyethylene glycol

Source
  • pseudomonas fluorescens (bacteria)
  • synthetic construct (others)
KeywordsHYDROLASE/DNA / DNA alkylation repair enzyme / HYDROLASE-DNA complex

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