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Structure paper

TitleProduct Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase.
Journal, issue, pagesBiochemistry, Vol. 56, Page 5758-5770, Year 2017
Publish dateJul 20, 2017 (structure data deposition date)
AuthorsMotoyama, T. / Nakano, S. / Yamamoto, Y. / Tokiwa, H. / Asano, Y. / Ito, S.
External linksBiochemistry / PubMed:28992410
MethodsX-ray diffraction
Resolution1.25 - 1.9 Å
Structure data

PDB-5y1d:
Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5y1e:
monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5y1f:
Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form)
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-5y1g:
Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-SER:
SERINE

ChemComp-AKB:
2-AMINO-3-KETOBUTYRIC ACID

Source
  • uncultured archaeon meddcm-oct-s05-c57 (environmental samples)
KeywordsOXIDOREDUCTASE / Dehydrogenase / NAD+ binding protein / NAD+ / L-Ser / 2-amino 3-ketobutyrate / NADH

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