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Structure paper

TitleSelective Targeting by a Mechanism-Based Inactivator against Pyridoxal 5'-Phosphate-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover.
Journal, issue, pagesBiochemistry, Vol. 56, Page 4951-4961, Year 2017
Publish dateMay 22, 2017 (structure data deposition date)
AuthorsMascarenhas, R. / Le, H.V. / Clevenger, K.D. / Lehrer, H.J. / Ringe, D. / Kelleher, N.L. / Silverman, R.B. / Liu, D.
External linksBiochemistry / PubMed:28816437
MethodsX-ray diffraction
Resolution1.72 - 1.8 Å
Structure data

PDB-5vwo:
Ornithine aminotransferase inactivated by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)
Method: X-RAY DIFFRACTION / Resolution: 1.773 Å

PDB-5vwq:
E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5vwr:
E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)-alpha-ketoglutarate
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

Chemicals

ChemComp-9QJ:
(1S,3S,4E)-3-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-4-iminocyclopentane-1-carboxylic acid

ChemComp-HOH:
WATER

ChemComp-PMP:
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

ChemComp-PL6:
(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid

ChemComp-GOL:
GLYCEROL

Source
  • homo sapiens (human)
  • escherichia coli k-12 (bacteria)
  • escherichia coli (strain k12) (bacteria)
KeywordsTRANSFERASE / Aminotransferase / Mechanism-based inactivator / PLP / Aspartate aminotransferase / PMP / (1R / 3S / 4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP) / ketimine / alpha-ketoglutarate

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