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Structure paper

TitleA nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Journal, issue, pagesSci Adv, Vol. 3, Page e1603042-e1603042, Year 2017
Publish dateJan 25, 2017 (structure data deposition date)
AuthorsShimada, A. / Kubo, M. / Baba, S. / Yamashita, K. / Hirata, K. / Ueno, G. / Nomura, T. / Kimura, T. / Shinzawa-Itoh, K. / Baba, J. ...Shimada, A. / Kubo, M. / Baba, S. / Yamashita, K. / Hirata, K. / Ueno, G. / Nomura, T. / Kimura, T. / Shinzawa-Itoh, K. / Baba, J. / Hatano, K. / Eto, Y. / Miyamoto, A. / Murakami, H. / Kumasaka, T. / Owada, S. / Tono, K. / Yabashi, M. / Yamaguchi, Y. / Yanagisawa, S. / Sakaguchi, M. / Ogura, T. / Komiya, R. / Yan, J. / Yamashita, E. / Yamamoto, M. / Ago, H. / Yoshikawa, S. / Tsukihara, T.
External linksSci Adv / PubMed:28740863
MethodsX-ray diffraction
Resolution2.2 - 2.4 Å
Structure data

PDB-5x19:
CO bound cytochrome c oxidase at 100 micro sec after pump laser irradiation to release CO from O2 reduction center
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5x1b:
CO bound cytochrome c oxidase at 20 nsec after pump laser irradiation to release CO from O2 reduction center
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5x1f:
CO bound cytochrome c oxidase without pump laser irradiation at 278K
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CMO:
CARBON MONOXIDE

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-CHD:
CHOLIC ACID

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-UNX:
Unknown entry

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-HOH:
WATER

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / cytochrome c oxidase / X-ray free electron laser / time-resolved analysis / proton pump / membrane protein / time resolved analysis

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