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Structure paper

TitlemRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation.
Journal, issue, pagesNucleic Acids Res., Vol. 45, Page 8661-8675, Year 2017
Publish dateApr 3, 2016 (structure data deposition date)
AuthorsRydzik, A.M. / Warminski, M. / Sikorski, P.J. / Baranowski, M.R. / Walczak, S. / Kowalska, J. / Zuberek, J. / Lukaszewicz, M. / Nowak, E. / W Claridge, T.D. ...Rydzik, A.M. / Warminski, M. / Sikorski, P.J. / Baranowski, M.R. / Walczak, S. / Kowalska, J. / Zuberek, J. / Lukaszewicz, M. / Nowak, E. / W Claridge, T.D. / Darzynkiewicz, E. / Nowotny, M. / Jemielity, J.
External linksNucleic Acids Res. / PubMed:28666355
MethodsX-ray diffraction
Resolution1.75 - 1.867 Å
Structure data

PDB-5j5o:
Translation initiation factor 4E in complex with m7GppppG mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 1.867 Å

PDB-5j5y:
Translation initiation factor 4E in complex with m2(7,2'O)GppCCl2ppG mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-6G0:
5'-O-[(R)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]-7-methylguanosine

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-6G6:
2-amino-9-{5-O-[(R)-{[(S)-{dichloro[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2-O-methyl-beta-D-ribofuranosyl}-7-methyl-9H-purin-7-ium-6-olate

Source
  • mus musculus (house mouse)
KeywordsTRANSLATION / Protein-ligand complex / translation initiation factor / eIF4E / m7GppppG / mRNA 5' cap analog / m2(7 / 2'O)GppCCl2ppG / dichloromethylenebisphosphonate

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