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Structure paper

TitleMadumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.
Journal, issue, pagesNucleic Acids Res., Vol. 45, Page 7507-7514, Year 2017
Publish dateMay 4, 2017 (structure data deposition date)
AuthorsOsterman, I.A. / Khabibullina, N.F. / Komarova, E.S. / Kasatsky, P. / Kartsev, V.G. / Bogdanov, A.A. / Dontsova, O.A. / Konevega, A.L. / Sergiev, P.V. / Polikanov, Y.S.
External linksNucleic Acids Res. / PubMed:28505372
MethodsX-ray diffraction
Resolution2.8 Å
Structure data

PDB-5vp2:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-M2D:
Madumycin II

ChemComp-ZN:
Unknown entry

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-HOH:
WATER

Source
  • escherichia coli (E. coli)
  • thermus thermophilus hb8 (bacteria)
  • thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (bacteria)
  • enterobacteria phage t4 (virus)
KeywordsRIBOSOME / Madumycin II / streptogramin A / antibiotic / ribosome inhibitor / 70S ribosome / ribosome structure / inhibition of translation / peptidyl transferase center

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