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Structure paper

TitleLight-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Journal, issue, pagesNature, Vol. 543, Page 131-135, Year 2017
Publish dateAug 20, 2016 (structure data deposition date)
AuthorsSuga, M. / Akita, F. / Sugahara, M. / Kubo, M. / Nakajima, Y. / Nakane, T. / Yamashita, K. / Umena, Y. / Nakabayashi, M. / Yamane, T. ...Suga, M. / Akita, F. / Sugahara, M. / Kubo, M. / Nakajima, Y. / Nakane, T. / Yamashita, K. / Umena, Y. / Nakabayashi, M. / Yamane, T. / Nakano, T. / Suzuki, M. / Masuda, T. / Inoue, S. / Kimura, T. / Nomura, T. / Yonekura, S. / Yu, L.J. / Sakamoto, T. / Motomura, T. / Chen, J.H. / Kato, Y. / Noguchi, T. / Tono, K. / Joti, Y. / Kameshima, T. / Hatsui, T. / Nango, E. / Tanaka, R. / Naitow, H. / Matsuura, Y. / Yamashita, A. / Yamamoto, M. / Nureki, O. / Yabashi, M. / Ishikawa, T. / Iwata, S. / Shen, J.R.
External linksNature / PubMed:28219079
MethodsX-ray diffraction
Resolution2.35 - 2.5 Å
Structure data

PDB-5gth:
Native XFEL structure of photosystem II (dark dataset)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5gti:
Native XFEL structure of photosystem II (two flash dataset)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5ws5:
Native XFEL structure of photosystem II (preflash dark dataset)
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-5ws6:
Native XFEL structure of Photosystem II (preflash two-flash dataset
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-CLA:
CHLOROPHYLL A

ChemComp-PHO:
PHEOPHYTIN A

ChemComp-BCR:
BETA-CAROTENE

ChemComp-SQD:
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

ChemComp-GOL:
GLYCEROL

ChemComp-OEX:
CA-MN4-O5 CLUSTER

ChemComp-PL9:
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-LHG:
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / phospholipid*YM

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-LMG:
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

ChemComp-HTG:
heptyl 1-thio-beta-D-glucopyranoside / detergent*YM

ChemComp-LMT:
DODECYL-BETA-D-MALTOSIDE / detergent*YM

ChemComp-DGD:
DIGALACTOSYL DIACYL GLYCEROL (DGDG)

ChemComp-CA:
Unknown entry

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-MG:
Unknown entry

ChemComp-HEC:
HEME C

ChemComp-HOH:
WATER

ChemComp-OEY:
CA-MN4-O6 CLUSTER

Source
  • thermosynechococcus vulcanus (bacteria)
KeywordsPHOTOSYNTHESIS / photosystem II / PSII / membrane protein

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