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Structure paper

TitleA substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Journal, issue, pagesNat Commun, Vol. 8, Page 14397-14397, Year 2017
Publish dateMar 12, 2016 (structure data deposition date)
AuthorsTakao, H. / Hirabayashi, K. / Nishigaya, Y. / Kouriki, H. / Nakaniwa, T. / Hagiwara, Y. / Harada, J. / Sato, H. / Yamazaki, T. / Sakakibara, Y. ...Takao, H. / Hirabayashi, K. / Nishigaya, Y. / Kouriki, H. / Nakaniwa, T. / Hagiwara, Y. / Harada, J. / Sato, H. / Yamazaki, T. / Sakakibara, Y. / Suiko, M. / Asada, Y. / Takahashi, Y. / Yamamoto, K. / Fukuyama, K. / Sugishima, M. / Wada, K.
External linksNat Commun / PubMed:28169272
MethodsX-ray diffraction
Resolution2.099 - 2.698 Å
Structure data

PDB-5b3t:
Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
Method: X-RAY DIFFRACTION / Resolution: 2.099 Å

PDB-5b3u:
Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
Method: X-RAY DIFFRACTION / Resolution: 2.698 Å

PDB-5b3v:
Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
Method: X-RAY DIFFRACTION / Resolution: 2.594 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-NAP:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

ChemComp-BLA:
BILIVERDINE IX ALPHA

Source
  • synechocystis sp. (strain pcc 6803 / kazusa) (bacteria)
  • synechocystis sp. (bacteria)
KeywordsTRANSFERASE / biliverdin reductase / heme degrading pathway / NAD(P)H-dependent enzyme / tetrapyrrole / Rossmann fold / NADPH complex

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