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Structure paper

TitleLigand binding phenomena that pertain to the metabolic function of renalase.
Journal, issue, pagesArch. Biochem. Biophys., Vol. 612, Page 46-56, Year 2016
Publish dateJun 21, 2016 (structure data deposition date)
AuthorsBeaupre, B.A. / Roman, J.V. / Hoag, M.R. / Meneely, K.M. / Silvaggi, N.R. / Lamb, A.L. / Moran, G.R.
External linksArch. Biochem. Biophys. / PubMed:27769837
MethodsX-ray diffraction
Resolution1.75 - 2.086 Å
Structure data

PDB-5kka:
E. coli malate dehydrogenase with the inhibitor 6DHNAD
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-5kkc:
l-lactate dehydrogenase from rabbit muscle with the inhibitor 6DHNAD
Method: X-RAY DIFFRACTION / Resolution: 1.859 Å

PDB-5krq:
Renalase in complex with NADPH
Method: X-RAY DIFFRACTION / Resolution: 2.086 Å

Chemicals

ChemComp-6V0:
[[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-NDP:
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Source
  • escherichia coli (strain k12) (bacteria)
  • oryctolagus cuniculus (rabbit)
  • pseudomonas savastanoi pv. phaseolicola (bacteria)
KeywordsOXIDOREDUCTASE / malate / dehydrogenase / 6DHNAD / inhibitor / beta- 6-dihydronicotimide adenine dinucleotide / lactate dehydrogenase / Renalase / substrate binding / NADPH

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