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Structure paper

TitleConformational States of HIV-1 Reverse Transcriptase for Nucleotide Incorporation vs Pyrophosphorolysis-Binding of Foscarnet.
Journal, issue, pagesAcs Chem. Biol., Vol. 11, Page 2158-2164, Year 2016
Publish dateJan 19, 2016 (structure data deposition date)
AuthorsDas, K. / Balzarini, J. / Miller, M.T. / Maguire, A.R. / DeStefano, J.J. / Arnold, E.
External linksAcs Chem. Biol. / PubMed:27192549
MethodsX-ray diffraction
Resolution2.75 - 3.3 Å
Structure data

PDB-5hp1:
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE In COMPLEX WITH A DNA aptamer and FOSCARNET, a Pyrophosphate analog
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-5hro:
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE In COMPLEX WITH A DNA aptamer and an Alpha-carboxy nucleoside phosphonate inhibitor (alpha-CNP)
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-5i3u:
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE N-SITE COMPLEX; CATALYTIC INCORPORATION OF AZTMP to A DNA aptamer in CRYSTAL
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-5i42:
Structure of HIV-1 Reverse Transcriptase in complex with a DNA aptamer, AZTTP, and CA(2+) ion
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-PPF:
PHOSPHONOFORMIC ACID / medication, antivirus, inhibitor*YM

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-ATM:
3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE

ChemComp-HOH:
WATER

ChemComp-3JY:
[(1R)-2-methoxy-1-{[(1S,3R)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]oxy}-2-oxoethyl]phosphonic acid

ChemComp-CA:
Unknown entry

ChemComp-AZT:
3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE

Source
  • human immunodeficiency virus type 1 group m subtype b (isolate bh10)
  • synthetic construct (others)
KeywordsTRANSFERASE/INHIBITOR/DNA / RT / DNA APTAMER / Foscavir / N site complex / pyrophosphate / pyrophosphorolysis / phosphonoformic acid / PFA / 2-O-METHYLCYTIDINE / P51 / P66 / TRANSFERASE / TRANSFERASE-INHIBITOR-DNA complex / TRANSFERASE/TRANSFERASE INHIBITOR / NCRTI / nucleotide-competing RT inhibitor / TRANSFERASE-TRANSFERASE INHIBITOR complex / TRANSFERASE/DNA / TRANSFERASE-DNA complex / AZTTP / polymerase / P site complex

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