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Structure paper

TitleRedox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 113, Page 2928-2933, Year 2016
Publish dateMar 17, 2015 (structure data deposition date)
AuthorsFukuda, Y. / Tse, K.M. / Nakane, T. / Nakatsu, T. / Suzuki, M. / Sugahara, M. / Inoue, S. / Masuda, T. / Yumoto, F. / Matsugaki, N. ...Fukuda, Y. / Tse, K.M. / Nakane, T. / Nakatsu, T. / Suzuki, M. / Sugahara, M. / Inoue, S. / Masuda, T. / Yumoto, F. / Matsugaki, N. / Nango, E. / Tono, K. / Joti, Y. / Kameshima, T. / Song, C. / Hatsui, T. / Yabashi, M. / Nureki, O. / Murphy, M.E. / Inoue, T. / Iwata, S. / Mizohata, E.
External linksProc. Natl. Acad. Sci. USA / PubMed:26929369
MethodsX-ray diffraction
Resolution1.2 - 2.03 Å
Structure data

PDB-4ysc:
Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-4yse:
High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-5d4h:
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-5d4i:
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5d4j:
Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5f7a:
Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

PDB-5f7b:
Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K
Method: X-RAY DIFFRACTION / Resolution: 1.56 Å

Chemicals

ChemComp-CU:
COPPER (II) ION

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-ACY:
ACETIC ACID

ChemComp-NO2:
NITRITE ION

ChemComp-GOL:
GLYCEROL

Source
  • alcaligenes faecalis (bacteria)
KeywordsOXIDOREDUCTASE / Nitrite / Copper / Reductase

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