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Structure paper

TitleAn Unusual Member of the Papain Superfamily: Mapping the Catalytic Cleft of the Marasmius oreades agglutinin (MOA) with a Caspase Inhibitor.
Journal, issue, pagesPlos One, Vol. 11, Page e0149407-e0149407, Year 2016
Publish dateAug 11, 2015 (structure data deposition date)
AuthorsCordara, G. / van Eerde, A. / Grahn, E.M. / Winter, H.C. / Goldstein, I.J. / Krengel, U.
External linksPlos One / PubMed:26901797
MethodsX-ray diffraction
Resolution1.6 - 1.7 Å
Structure data

PDB-5d61:
MOA-Z-VAD-fmk complex, direct orientation
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5d62:
MOA-Z-VAD-fmk complex, inverted orientation
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-5d63:
MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-FUC:
alpha-L-fucopyranose

Source
  • marasmius oreades (fairy-ring Marasmius)
  • synthetic construct (others)
KeywordsHYDROLASE / papain-like / inhibitor / protease / fungal

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