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Structure paper

TitleGeneral Base-General Acid Catalysis in Human Histone Deacetylase 8.
Journal, issue, pagesBiochemistry, Vol. 55, Page 820-832, Year 2016
Publish dateAug 23, 2015 (structure data deposition date)
AuthorsGantt, S.M. / Decroos, C. / Lee, M.S. / Gullett, L.E. / Bowman, C.M. / Christianson, D.W. / Fierke, C.A.
External linksBiochemistry / PubMed:26806311
MethodsX-ray diffraction
Resolution1.3 - 2.3 Å
Structure data

PDB-5dc5:
Crystal structure of D176N HDAC8 in complex with M344
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-5dc6:
Crystal structure of D176N-Y306F HDAC8 in complex with a tetrapeptide substrate
Method: X-RAY DIFFRACTION / Resolution: 1.553 Å

PDB-5dc7:
Crystal structure of D176A-Y306F HDAC8 in complex with a tetrapeptide substrate
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5dc8:
Crystal structure of H142A-Y306F HDAC8 in complex with a tetrapeptide substrate
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

Chemicals

ChemComp-K:
Unknown entry

ChemComp-B3N:
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsHydrolase/Hydrloase inhibitor / histone deacetylase 8 / arginase fold / deacetylase / enzyme-inhibitor complex / Hydrolase-Hydrloase inhibitor complex / HYDROLASE / enzyme-substrate complex

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