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Structure paper

TitleStructural Basis for Nucleotide Hydrolysis by the Acid Sphingomyelinase-like Phosphodiesterase SMPDL3A.
Journal, issue, pagesJ. Biol. Chem., Vol. 291, Page 6376-6385, Year 2016
Publish dateDec 14, 2015 (structure data deposition date)
AuthorsGorelik, A. / Illes, K. / Superti-Furga, G. / Nagar, B.
External linksJ. Biol. Chem. / PubMed:26792860
MethodsX-ray diffraction
Resolution1.389 - 1.924 Å
Structure data

PDB-5fc1:
Murine SMPDL3A in complex with sulfate
Method: X-RAY DIFFRACTION / Resolution: 1.389 Å

PDB-5fc5:
Murine SMPDL3A in complex with phosphocholine
Method: X-RAY DIFFRACTION / Resolution: 1.678 Å

PDB-5fc6:
Murine SMPDL3A in complex with ADP analog AMPCP
Method: X-RAY DIFFRACTION / Resolution: 1.658 Å

PDB-5fc7:
Murine SMPDL3A in complex with sulfate (tetragonal)
Method: X-RAY DIFFRACTION / Resolution: 1.456 Å

PDB-5fca:
Murine SMPDL3A in presence of excess zinc
Method: X-RAY DIFFRACTION / Resolution: 1.924 Å

PDB-5fcb:
Murine SMPDL3A in complex with AMP
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-PC:
PHOSPHOCHOLINE

ChemComp-AP2:
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

Source
  • mus musculus (house mouse)
KeywordsHYDROLASE / SMPDL3A / sphingomyelin / nucleotide / phosphocholine / zinc / AMP

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