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Structure paper

TitleMn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Journal, issue, pagesMol. Cell, Vol. 57, Page 1110-1123, Year 2015
Publish dateFeb 7, 2015 (structure data deposition date)
AuthorsPrice, I.R. / Gaballa, A. / Ding, F. / Helmann, J.D. / Ke, A.
External linksMol. Cell / PubMed:25794619
MethodsX-ray diffraction
Resolution2.24 - 3 Å
Structure data

PDB-4y1i:
Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-4y1j:
Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-4y1m:
An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
Method: X-RAY DIFFRACTION / Resolution: 3 Å

Chemicals

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-BA:
Unknown entry

ChemComp-MN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-SR:
STRONTIUM ION

Source
  • lactococcus lactis subsp. lactis (lactic acid bacteria)
  • escherichia coli (E. coli)
KeywordsRNA / riboswitch / manganese-binding / mutant / manganese / free state

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