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Structure paper

TitleHelical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4.
Journal, issue, pagesJ. Biol. Chem., Vol. 290, Page 3622-3638, Year 2015
Publish dateSep 5, 2014 (structure data deposition date)
AuthorsChan, A.C. / Blair, K.M. / Liu, Y. / Frirdich, E. / Gaynor, E.C. / Tanner, M.E. / Salama, N.R. / Murphy, M.E.
External linksJ. Biol. Chem. / PubMed:25505267
MethodsX-ray diffraction
Resolution1.4 - 1.85 Å
Structure data

PDB-4wck:
Crystal Structure of apo Cell Shape Determinant protein Csd4 from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-4wcl:
Crystal Structure of product bound Cell Shape Determinant protein Csd4 from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-4wcm:
Crystal Structure of Cell Shape Determinant protein Csd4 Gln46His variant from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-4wcn:
Crystal Structure of Tripeptide bound Cell Shape Determinant Csd4 protein from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-IOD:
IODIDE ION

ChemComp-API:
2,6-DIAMINOPIMELIC ACID

ChemComp-HOH:
WATER

ChemComp-ZN:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-3KS:
N-acetyl-L-alanyl-N-[(1S,5R)-5-amino-1,5-dicarboxypentyl]-D-glutamine

Source
  • helicobacter pylori (bacteria)
KeywordsHYDROLASE / mixed alpha beta sandwich / carboxypeptidase / M14

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