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Structure paper

TitleStructural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape
Journal, issue, pagesActa Crystallogr. ,Sect. D, Vol. 70, Page 2800-2812, Year 2014
Publish dateApr 23, 2014 (structure data deposition date)
AuthorsKim, H.S. / Kim, J. / Im, H.N. / An, D.R. / Lee, M. / Hesek, D. / Mobashery, S. / Kim, J.Y. / Cho, K. / Yoon, H.J. ...Kim, H.S. / Kim, J. / Im, H.N. / An, D.R. / Lee, M. / Hesek, D. / Mobashery, S. / Kim, J.Y. / Cho, K. / Yoon, H.J. / Han, B.W. / Lee, B.I. / Suh, S.W.
External linksActa Crystallogr. ,Sect. D / PubMed:25372672
MethodsX-ray diffraction
Resolution1.41 - 2.62 Å
Structure data

PDB-4q6m:
Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4q6n:
Structural analysis of the tripeptide-bound form of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-4q6o:
Structural analysis of the mDAP-bound form of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Method: X-RAY DIFFRACTION / Resolution: 1.41 Å

PDB-4q6p:
Structural analysis of the Zn-form I of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Method: X-RAY DIFFRACTION / Resolution: 2.62 Å

PDB-4q6q:
Structural analysis of the Zn-form II of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-MHI:
L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID

ChemComp-API:
2,6-DIAMINOPIMELIC ACID

ChemComp-ZN:
Unknown entry

Source
  • helicobacter pylori (bacteria)
KeywordsHYDROLASE / M14 metallopeptidase / D / L-carboxypeptidase / peptidoglycan / Csd5

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