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Structure paper

TitleCrystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.
Journal, issue, pagesJ. Biol. Inorg. Chem., Vol. 20, Page 11-22, Year 2015
Publish dateJun 16, 2014 (structure data deposition date)
AuthorsVolbeda, A. / Martin, L. / Barbier, E. / Gutierrez-Sanz, O. / De Lacey, A.L. / Liebgott, P.P. / Dementin, S. / Rousset, M. / Fontecilla-Camps, J.C.
External linksJ. Biol. Inorg. Chem. / PubMed:25315838
MethodsX-ray diffraction
Resolution1.22 - 1.8 Å
Structure data

PDB-4upe:
Structure of the unready Ni-A state of the S499C mutant of D. fructosovorans NiFe-hydrogenase
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4upv:
Low X-ray dose structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-4uql:
High-resolution structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant
Method: X-RAY DIFFRACTION / Resolution: 1.22 Å

PDB-4uqp:
High-resolution structure of the D. fructosovorans NiFe-hydrogenase L122A mutant after exposure to air
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-4urh:
High-resolution structure of partially oxidized D. fructosovorans NiFe-hydrogenase
Method: X-RAY DIFFRACTION / Resolution: 1.44 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER / Iron–sulfur cluster

ChemComp-F3S:
FE3-S4 CLUSTER / Iron–sulfur cluster

ChemComp-FCO:
CARBONMONOXIDE-(DICYANO) IRON

ChemComp-NI:
NICKEL (II) ION / Nickel

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-PO4:
PHOSPHATE ION / Phosphate

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM / MES (buffer)

ChemComp-HOH:
WATER / Water

ChemComp-GLY:
GLYCINE / Glycine

ChemComp-SOT:
morpholine-4-sulfonic acid

ChemComp-H2S:
HYDROSULFURIC ACID / Hydrogen sulfide

ChemComp-MG:
Unknown entry

ChemComp-CL:
Unknown entry / Chloride

Source
  • desulfovibrio fructosovorans (bacteria)
KeywordsOXIDOREDUCTASE / NIFE-SITE / NI-A STATE / SULFENATE / NI-SOX STATE / PERSULFIDE / NI-SU STATE

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