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TitleAmicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.
Journal, issue, pagesMol. Cell, Vol. 56, Page 531-540, Year 2014
Publish dateSep 12, 2014 (structure data deposition date)
AuthorsPolikanov, Y.S. / Osterman, I.A. / Szal, T. / Tashlitsky, V.N. / Serebryakova, M.V. / Kusochek, P. / Bulkley, D. / Malanicheva, I.A. / Efimenko, T.A. / Efremenkova, O.V. ...Polikanov, Y.S. / Osterman, I.A. / Szal, T. / Tashlitsky, V.N. / Serebryakova, M.V. / Kusochek, P. / Bulkley, D. / Malanicheva, I.A. / Efimenko, T.A. / Efremenkova, O.V. / Konevega, A.L. / Shaw, K.J. / Bogdanov, A.A. / Rodnina, M.V. / Dontsova, O.A. / Mankin, A.S. / Steitz, T.A. / Sergiev, P.V.
External linksMol. Cell / PubMed:25306919
MethodsX-ray diffraction
Resolution2.4 - 2.7 Å
Structure data

PDB-4w2f:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-4w2g:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-4w2h:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-UAM:
Amicoumacin A

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-ZN:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-PCY:
Pactamycin

Source
  • escherichia coli (E. coli)
  • thermus thermophilus (bacteria)
  • synthetic construct (others)
KeywordsRIBOSOME/ANTIBIOTIC / Amicoumacin / antibiotic / 70S ribosome / inhibition of translation / translocation inhibitor / 30S subunit with amicoumacin / mRNA / deacylated A- / P- / and E-site tRNAs of the 1st 70S ribosome in the ASU / Functional complex of bacterial 70S ribosome with antibiotic amicoumacin / RIBOSOME-ANTIBIOTIC complex / Pactamycin / initiation inhibitor / 30S subunit with pactamycin (soaked) / Functional complex of bacterial 70S ribosome with antibiotic pactamycin (compact conformation) / 50S subunit of the 1st 70S ribosome in the ASU / 30S subunit with pactamycin (co-crystallized) / deacylated P-site tRNA / and E-site tRNA acceptor stem of the 1st 70S ribosome in the ASU / Functional complex of bacterial 70S ribosome with antibiotic pactamycin (extended conformation)

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