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Structure paper

TitleStructural Basis for the Inefficient Nucleotide Incorporation Opposite Cisplatin-DNA Lesion by Human DNA Polymerase beta.
Journal, issue, pagesJ. Biol. Chem., Vol. 289, Page 31341-31348, Year 2014
Publish dateJun 24, 2014 (structure data deposition date)
AuthorsKoag, M.C. / Lai, L. / Lee, S.
External linksJ. Biol. Chem. / PubMed:25237188
MethodsX-ray diffraction
Resolution1.8 - 2.42 Å
Structure data

PDB-4tup:
Structure of human DNA polymerase beta complexed with GG as the template (GG0b) in a 1-nucleotide gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4tuq:
Human DNA polymerase beta inserting dCMPNPP opposite GG template (GG0b).
Method: X-RAY DIFFRACTION / Resolution: 2.367 Å

PDB-4tur:
Human DNA polymerase beta inserting dCMPNPP opposite the 5'G of cisplatin crosslinked Gs (Pt-GG2)
Method: X-RAY DIFFRACTION / Resolution: 2.169 Å

PDB-4tus:
Human DNA polymerase beta inserting dCMPNPP opposite the 5'G of cisplatin crosslinked Gs (Pt-GG2) WITH MANGANESE IN THE ACTIVE SITE.
Method: X-RAY DIFFRACTION / Resolution: 2.42 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-0KX:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine

ChemComp-CPT:
Cisplatin / medication, chemotherapy*YM

ChemComp-MN:
Unknown entry

Source
  • homo sapiens (human)
KeywordsTransferase / Lyase/DNA / DNA polymerase / Lyase-DNA complex

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