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TitleA molecular threading mechanism underlies Jumonji lysine demethylase KDM2A regulation of methylated H3K36.
Journal, issue, pagesGenes Dev., Vol. 28, Page 1758-1771, Year 2014
Publish dateJul 16, 2014 (structure data deposition date)
AuthorsCheng, Z. / Cheung, P. / Kuo, A.J. / Yukl, E.T. / Wilmot, C.M. / Gozani, O. / Patel, D.J.
External linksGenes Dev. / PubMed:25128496
MethodsX-ray diffraction
Resolution1.6 - 2.34 Å
Structure data

PDB-4qwn:
Histone demethylase KDM2A-H3K36ME1-alpha-KG complex structure
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4qx7:
Crystal structure of histone demethylase kdm2a-h3k36me2 with alpha-kg
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-4qx8:
Crystal structure of histone demethylase kdm2a-h3k36me3 complex with alpha-kg
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-4qxb:
crystal structure of histone demethylase KDM2A-H3K36ME3 with NOG
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4qxc:
Crystal structure of histone demethylase KDM2A-H3K36ME2 with NOG
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-4qxh:
Crystal structure of histone demethylase KDM2A-H3K36ME1 with NOG
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4tn7:
Crystal structure of mouse KDM2A-H3K36ME-NO complex
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-NI:
NICKEL (II) ION

ChemComp-HOH:
WATER

ChemComp-OGA:
N-OXALYLGLYCINE / inhibitor*YM

ChemComp-FE:
Unknown entry

ChemComp-NO:
NITRIC OXIDE

ChemComp-SIN:
SUCCINIC ACID

Source
  • mus musculus (house mouse)
  • homo sapiens (human)
KeywordsOxidoreductase/Structural Protein / cupin subfamily Fe(II)/2-OG dioxygenase / JmjC domain / Histone demethylase / Oxidoreductase-Structural Protein complex / OXIDOREDUCTASE

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