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Structure paper

TitleTransition-state destabilization reveals how human DNA polymerase beta proceeds across the chemically unstable lesion N7-methylguanine.
Journal, issue, pagesNucleic Acids Res., Vol. 42, Page 8755-8766, Year 2014
Publish dateDec 19, 2013 (structure data deposition date)
AuthorsKoag, M.C. / Kou, Y. / Ouzon-Shubeita, H. / Lee, S.
External linksNucleic Acids Res. / PubMed:24966350
MethodsX-ray diffraction
Resolution1.987 - 2.532 Å
Structure data

PDB-4o5c:
Structure of human DNA polymerase complexed with N7-MG as the template base in a 1-nucleotide gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 2.363 Å

PDB-4o5e:
Structure of human DNA polymerase complexed with N7MG in the template base paired with incoming non-hydrolyzable TTP
Method: X-RAY DIFFRACTION / Resolution: 2.532 Å

PDB-4o5k:
Structure of human DNA polymerase complexed with N7MG in the template base paired with incoming non-hydrolyzable CTP
Method: X-RAY DIFFRACTION / Resolution: 2.058 Å

PDB-4p2h:
Structure of human DNA polymerase complexed with N7MG in the template opposite to incoming non-hydrolyzable TTP with manganese in the active site
Method: X-RAY DIFFRACTION / Resolution: 1.987 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-1FZ:
5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine

ChemComp-0KX:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine

ChemComp-MN:
Unknown entry

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsTransferase / Lyase/DNA / DNA binding / polymerase fold / nucleotidyl transfer / DNA / nucleus / Lyase-DNA complex / TRANSFERASE/DNA / DNA polymerase fold / TRANSFERASE-DNA complex

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