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Structure paper

TitleStructures of HIV-1 RT-RNA/DNA ternary complexes with dATP and nevirapine reveal conformational flexibility of RNA/DNA: insights into requirements for RNase H cleavage.
Journal, issue, pagesNucleic Acids Res., Vol. 42, Page 8125-8137, Year 2014
Publish dateMar 4, 2014 (structure data deposition date)
AuthorsDas, K. / Martinez, S.E. / Bandwar, R.P. / Arnold, E.
External linksNucleic Acids Res. / PubMed:24880687
MethodsX-ray diffraction
Resolution2.508 - 3.3 Å
Structure data

PDB-4pqu:
Crystal structure of HIV-1 Reverse Transcriptase in complex with RNA/DNA and dATP
Method: X-RAY DIFFRACTION / Resolution: 2.508 Å

PDB-4puo:
Crystal structure of HIV-1 reverse transcriptase in complex with RNA/DNA and Nevirapine
Method: X-RAY DIFFRACTION / Resolution: 2.901 Å

PDB-4pwd:
Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-4q0b:
Crystal structure of HIV-1 reverse transcriptase in complex with gap-RNA/DNA and Nevirapine
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

Chemicals

ChemComp-DTP:
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE

ChemComp-MG:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-NVP:
11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE / medication, antiretroviral*YM

ChemComp-CA:
Unknown entry

ChemComp-MN:
Unknown entry

Source
  • human immunodeficiency virus type 1
KeywordsTRANSFERASE / HYDROLASE/DNA/RNA / fingers / palm / thumb / connection / RNase H / nucleotidyltransferase / DNA-directed DNA polymerase / RNA-directed DNA polymerase / HYDROLASE-DNA-RNA complex / HYDROLASE/DNA/RNA/INHIBITOR / Nuclease / Ribonuclease H / tRNA / HYDROLASE-DNA-RNA-INHIBITOR complex / HYDROLASE/RNA/DNA/INHIBITOR / HYDROLASE-RNA-DNA-INHIBITOR complex

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