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Structure paper

TitleStructural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.
Journal, issue, pagesAppl. Environ. Microbiol., Vol. 80, Page 2821-2832, Year 2014
Publish dateOct 23, 2013 (structure data deposition date)
AuthorsInoue, K. / Usami, Y. / Ashikawa, Y. / Noguchi, H. / Umeda, T. / Yamagami-Ashikawa, A. / Horisaki, T. / Uchimura, H. / Terada, T. / Nakamura, S. ...Inoue, K. / Usami, Y. / Ashikawa, Y. / Noguchi, H. / Umeda, T. / Yamagami-Ashikawa, A. / Horisaki, T. / Uchimura, H. / Terada, T. / Nakamura, S. / Shimizu, K. / Habe, H. / Yamane, H. / Fujimoto, Z. / Nojiri, H.
External linksAppl. Environ. Microbiol. / PubMed:24584240
MethodsX-ray diffraction
Resolution1.85 - 2.15 Å
Structure data

PDB-4nb8:
Oxygenase with Ile262 replaced by Leu and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

PDB-4nb9:
Oxygenase with Ile262 replaced by Val and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-4nba:
Carbazole-bound oxygenase with Ile262 replaced by Val and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4nbb:
Carbazole- and oxygen-bound oxygenase with Ile262 replaced by Val and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-4nbc:
Oxygenase with Phe275 replaced by Trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form1)
Method: X-RAY DIFFRACTION / Resolution: 1.945 Å

PDB-4nbd:
Carbazole-bound oxygenase with Phe275 replaced by Trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-4nbe:
Fluorene-bound oxygenase with Phe275 replaced by Trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4nbf:
Oxygenase with Gln282 replaced by Asn and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4nbg:
Oxygenase with Gln282 replaced by Tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-4nbh:
Carbazole-bound Oxygenase with Gln282 replaced by Tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER

ChemComp-HOH:
WATER

ChemComp-9CA:
9H-CARBAZOLE

ChemComp-OXY:
OXYGEN MOLECULE

ChemComp-9FL:
9H-fluorene

Source
  • janthinobacterium (bacteria)
  • pseudomonas resinovorans (bacteria)
KeywordsOXIDOREDUCTASE / Rieske non-heme iron oxygenase / carbazole 1 / 9a-dioxygenase

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