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Structure paper

TitleInherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP.
Journal, issue, pagesJ. Biol. Chem., Vol. 289, Page 6978-6990, Year 2014
Publish dateMay 2, 2013 (structure data deposition date)
AuthorsSundriyal, A. / Massa, C. / Samoray, D. / Zehender, F. / Sharpe, T. / Jenal, U. / Schirmer, T.
External linksJ. Biol. Chem. / PubMed:24451384
MethodsX-ray diffraction
Resolution1.7 - 2.4 Å
Structure data

PDB-4kie:
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-4lj3:
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with substrate c-di-GMP and Ca++
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-4lyk:
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-CA:
Unknown entry

ChemComp-IMD:
IMIDAZOLE

ChemComp-HB0:
trans-4-(hydroxymethyl)cyclohexanol

ChemComp-MG:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • escherichia coli (E. coli)
KeywordsHYDROLASE / pGpG / phosphodiesterase / TIM-barrel

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