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Structure paper

TitleStructural basis for promutagenicity of 8-halogenated Guanine.
Journal, issue, pagesJ. Biol. Chem., Vol. 289, Page 6289-6298, Year 2014
Publish dateAug 5, 2013 (structure data deposition date)
AuthorsKoag, M.C. / Min, K. / Lee, S.
External linksJ. Biol. Chem. / PubMed:24425881
MethodsX-ray diffraction
Resolution2.261 - 2.683 Å
Structure data

PDB-4m2y:
Structure of human DNA polymerase beta complexed with 8-BrG as the template base in a 1-nucleotide gapped DNA
Method: X-RAY DIFFRACTION / Resolution: 2.27 Å

PDB-4m47:
structure of human DNA polymerase complexed with 8-BrG in the template base paired with incoming non-hydrolyzable GTP
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-4nlk:
Structure of human DNA polymerase beta complexed with 8BrG in the template base-paired with incoming non-hydrolyzable CTP
Method: X-RAY DIFFRACTION / Resolution: 2.494 Å

PDB-4nln:
Structure of human DNA polymerase beta complexed with nicked DNA containing a template 8BrG and incoming CTP
Method: X-RAY DIFFRACTION / Resolution: 2.261 Å

PDB-4nlz:
Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template 8BrG and incoming GTP
Method: X-RAY DIFFRACTION / Resolution: 2.683 Å

PDB-4nm1:
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-C at N-1 position and G-C at N position
Method: X-RAY DIFFRACTION / Resolution: 2.415 Å

PDB-4nm2:
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-G at N-1 position and G-C at N position
Method: X-RAY DIFFRACTION / Resolution: 2.524 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-XG4:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine

ChemComp-MG:
Unknown entry

ChemComp-0KX:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine

ChemComp-PO4:
PHOSPHATE ION

Source
  • homo sapiens (human)
KeywordsTRANSFERASE/DNA / promutagenic 8-halogenated G insertion / polymerase -DNA complex / base excision repair / TRANSFERASE-DNA complex / DNA synthesis / TRANSFERASE / LYASE/DNA / DNA binding / helix-turn-helix motif / polymerase fold / nucleotidyl transferase / nucleus / LYASE-DNA complex

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