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Structure paper

TitleDuplex-quadruplex motifs in a peculiar structural organization cooperatively contribute to thrombin binding of a DNA aptamer.
Journal, issue, pagesActa Crystallogr. ,Sect. D, Vol. 69, Page 2403-2411, Year 2013
Publish dateDec 1, 2012 (structure data deposition date)
AuthorsRusso Krauss, I. / Pica, A. / Merlino, A. / Mazzarella, L. / Sica, F.
External linksActa Crystallogr. ,Sect. D / PubMed:24311581
MethodsX-ray diffraction
Resolution2.4 Å
Structure data

PDB-4i7y:
Crystal Structure of Human Alpha Thrombin in Complex with a 27-mer Aptamer Bound to Exosite II
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-0G6:
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

ChemComp-NA:
Unknown entry

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
  • synthetic dna (others)
KeywordsHYDROLASE/HYDROLASE INHIBITOR/DNA / Protein-DNA complex / serine protease / blood coagulation / aptamer / hydrolase-hydrolase inhibitor-DNA complex / serine protease fold / DNA aptamer / blood / G-quadruplex / duplex-quadruplex junction

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