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Structure paper

TitleDiscovery of new enzymes and metabolic pathways by using structure and genome context.
Journal, issue, pagesNature, Vol. 502, Page 698-702, Year 2013
Publish dateApr 23, 2007 (structure data deposition date)
AuthorsZhao, S. / Kumar, R. / Sakai, A. / Vetting, M.W. / Wood, B.M. / Brown, S. / Bonanno, J.B. / Hillerich, B.S. / Seidel, R.D. / Babbitt, P.C. ...Zhao, S. / Kumar, R. / Sakai, A. / Vetting, M.W. / Wood, B.M. / Brown, S. / Bonanno, J.B. / Hillerich, B.S. / Seidel, R.D. / Babbitt, P.C. / Almo, S.C. / Sweedler, J.V. / Gerlt, J.A. / Cronan, J.E. / Jacobson, M.P.
External linksNature / PubMed:24056934
MethodsX-ray diffraction
Resolution1.7 - 1.72 Å
Structure data

PDB-2pmq:
Crystal structure of a mandelate racemase/muconate lactonizing enzyme from Roseovarius sp. HTCC2601
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-4h2h:
Crystal structure of an enolase (mandalate racemase subgroup, target EFI-502101) from Pelagibaca bermudensis htcc2601, with bound mg and l-4-hydroxyproline betaine (betonicine)
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NI:
NICKEL (II) ION

ChemComp-0XW:
(2S,4R)-4-hydroxy-1,1-dimethylpyrrolidinium-2-carboxylate

ChemComp-IOD:
IODIDE ION

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

Source
  • roseovarius sp. (bacteria)
  • pelagibaca bermudensis (bacteria)
KeywordsISOMERASE / Structural genomics / PSI-2 / Protein Structure Initiative / New York SGX Research Center for Structural Genomics / NYSGXRC / Enolase / mandelate racemase subgroup / enzyme function initiative / EFI

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