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Structure paper

TitleCrystal structures of alpha-dioxygenase from Oryza sativa: Insights into substrate binding and activation by hydrogen peroxide.
Journal, issue, pagesProtein Sci., Vol. 22, Page 1432-1438, Year 2013
Publish dateMay 22, 2013 (structure data deposition date)
AuthorsZhu, G. / Koszelak-Rosenblum, M. / Malkowski, M.G.
External linksProtein Sci. / PubMed:23934749
MethodsX-ray diffraction
Resolution1.96 - 2.12 Å
Structure data

PDB-4kvj:
Crystal structure of Oryza sativa fatty acid alpha-dioxygenase with hydrogen peroxide
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-4kvk:
Crystal structure of Oryza sativa fatty acid alpha-dioxygenase
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-4kvl:
Crystal structure of Oryza sativa fatty acid alpha-dioxygenase Y379F with palmitic acid
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-P33:
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL / precipitant*YM

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-CA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-PEO:
HYDROGEN PEROXIDE

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-PLM:
PALMITIC ACID

ChemComp-IMD:
IMIDAZOLE

ChemComp-BOG:
octyl beta-D-glucopyranoside / detergent*YM

Source
  • oryza sativa (Asian cultivated rice)
KeywordsOXIDOREDUCTASE / PIOX / COX-like protein / fatty acid alpha-dioxygenase / Heme binding / Calcium Binding / monotopic membrane protein

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