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Structure paper

TitleMultidonor Analysis Reveals Structural Elements, Genetic Determinants, and Maturation Pathway for HIV-1 Neutralization by VRC01-Class Antibodies.
Journal, issue, pagesImmunity, Vol. 39, Page 245-258, Year 2013
Publish dateJul 23, 2013 (structure data deposition date)
AuthorsZhou, T. / Zhu, J. / Wu, X. / Moquin, S. / Zhang, B. / Acharya, P. / Georgiev, I.S. / Altae-Tran, H.R. / Chuang, G.Y. / Joyce, M.G. ...Zhou, T. / Zhu, J. / Wu, X. / Moquin, S. / Zhang, B. / Acharya, P. / Georgiev, I.S. / Altae-Tran, H.R. / Chuang, G.Y. / Joyce, M.G. / Do Kwon, Y. / Longo, N.S. / Louder, M.K. / Luongo, T. / McKee, K. / Schramm, C.A. / Skinner, J. / Yang, Y. / Yang, Z. / Zhang, Z. / Zheng, A. / Bonsignori, M. / Haynes, B.F. / Scheid, J.F. / Nussenzweig, M.C. / Simek, M. / Burton, D.R. / Koff, W.C. / Mullikin, J.C. / Connors, M. / Shapiro, L. / Nabel, G.J. / Mascola, J.R. / Kwong, P.D.
External linksImmunity / PubMed:23911655
MethodsX-ray diffraction
Resolution2.15 - 3 Å
Structure data

PDB-4lsp:
Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-4lsq:
Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057 with LOOP D and Loop V5 from clade A strain 3415_v1_c1
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-4lsr:
Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E stran 93TH057 gp120 with LOOP D and Loop V5 from clade A strain KER_2018_11
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-4lss:
Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120
Method: X-RAY DIFFRACTION / Resolution: 2.59 Å

PDB-4lst:
Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade C strain ZM176.66 gp120
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-4lsu:
Crystal structure of broadly and potently neutralizing antibody VRC-PG20 in complex with HIV-1 clade A/E 93TH057 gp120
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4lsv:
Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120
Method: X-RAY DIFFRACTION / Resolution: 3 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-CD:
Unknown entry

ChemComp-BU3:
(R,R)-2,3-BUTANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM

ChemComp-IMD:
IMIDAZOLE

Source
  • human immunodeficiency virus 1
  • homo sapiens (human)
Keywordsviral protein/immune system / Neutralizing antibody VRC-CH31 / HIV envelope glycoprotein gp120 / viral protein-immune system complex / antibody antigen complex / Neutralizing antibody VRC01 / antibody antigen / Neutralizing antibody VRC-PG20 / Neutralizing antibody 3BNC117

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