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Structure paper

TitleStructure and Reaction Mechanism of Pyrrolysine Synthase (PylD).
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 52, Page 7033-7037, Year 2013
Publish dateFeb 6, 2013 (structure data deposition date)
AuthorsQuitterer, F. / Beck, P. / Bacher, A. / Groll, M.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:23720358
MethodsX-ray diffraction
Resolution1.8 - 2.5 Å
Structure data

PDB-4j43:
PylD holoenzyme
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4j49:
PylD holoenzyme soaked with L-lysine-Ne-D-ornithine
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4j4b:
PylD in complex with L-lysine-Ne-D-ornithine and NADH
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4j4h:
PylD in complex with pyrroline-carboxy-lysine and NADH
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4jk3:
PylD holoenzyme (SeMet)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

ChemComp-1J1:
N~6~-[(2R)-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]-L-lysine

ChemComp-0TF:
N~6~-D-ornithyl-L-lysine

Source
  • methanosarcina barkeri (archaea)
KeywordsOXIDOREDUCTASE / Pyrrolysine / 22nd Amino Acid / Biosynthesis / Rossmann Fold / Dehydrogenase / NAD / L-lysine-Ne-3R-methyl-D-ornithine / NADH / Pyrroline-carboxy-lysine

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