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Structure paper

TitleStructural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
Journal, issue, pagesJ. Biol. Chem., Vol. 288, Page 6351-6362, Year 2013
Publish dateSep 21, 2012 (structure data deposition date)
AuthorsOtani, J. / Arita, K. / Kato, T. / Kinoshita, M. / Kimura, H. / Suetake, I. / Tajima, S. / Ariyoshi, M. / Shirakawa, M.
External linksJ. Biol. Chem. / PubMed:23316048
MethodsX-ray diffraction
Resolution2 - 2.525 Å
Structure data

PDB-3vxv:
Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3vxx:
Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence
Method: X-RAY DIFFRACTION / Resolution: 2.204 Å

PDB-3vyb:
Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/hmCG sequence
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3vyq:
Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Method: X-RAY DIFFRACTION / Resolution: 2.525 Å

Chemicals

ChemComp-ACT:
ACETATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-ZN:
Unknown entry

Source
  • mus musculus (house mouse)
KeywordsHYDROLASE/DNA / methyl CpG binding domain / protein-DNA complex / versatile base recognition / HYDROLASE-DNA complex

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