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Structure paper

TitleUnique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 109, Page 19971-19976, Year 2012
Publish dateOct 26, 2012 (structure data deposition date)
AuthorsDavies, D.R. / Gelinas, A.D. / Zhang, C. / Rohloff, J.C. / Carter, J.D. / O'Connell, D. / Waugh, S.M. / Wolk, S.K. / Mayfield, W.S. / Burgin, A.B. ...Davies, D.R. / Gelinas, A.D. / Zhang, C. / Rohloff, J.C. / Carter, J.D. / O'Connell, D. / Waugh, S.M. / Wolk, S.K. / Mayfield, W.S. / Burgin, A.B. / Edwards, T.E. / Stewart, L.J. / Gold, L. / Janjic, N. / Jarvis, T.C.
External linksProc. Natl. Acad. Sci. USA / PubMed:23139410
MethodsX-ray diffraction
Resolution2.2 - 2.3 Å
Structure data

PDB-4hqu:
Crystal structure of human PDGF-BB in complex with a modified nucleotide aptamer (SOMAmer SL5)
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4hqx:
CRYSTAL STRUCTURE OF HUMAN PDGF-BB IN COMPLEX WITH A Modified nucleotide aptamer (SOMAmer SL4)
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
KeywordsHORMONE/DNA / Growth factor / SELEX / aptamer / 5-modified deoxyuridine / HORMONE-DNA complex

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