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Structure paper

TitleExcision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
Journal, issue, pagesNucleic Acids Res., Vol. 40, Page 8276-8284, Year 2012
Publish dateApr 26, 2012 (structure data deposition date)
AuthorsHashimoto, H. / Zhang, X. / Cheng, X.
External linksNucleic Acids Res. / PubMed:22740654
MethodsX-ray diffraction
Resolution2.39 - 2.791 Å
Structure data

PDB-4evv:
mouse MBD4 glycosylase domain in complex with a G:T mismatch
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

PDB-4ew0:
mouse MBD4 glycosylase domain in complex with a G:5hmU (5-hydroxymethyluracil) mismatch
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

PDB-4ew4:
mouse MBD4 glycosylase domain in complex with DNA containing a ribose sugar
Method: X-RAY DIFFRACTION / Resolution: 2.791 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NI:
NICKEL (II) ION

ChemComp-HOH:
WATER

ChemComp-UNX:
Unknown entry

Source
  • mus musculus (house mouse)
  • synthetic construct (others)
KeywordsHYDROLASE/DNA / G:T mismatch / deamination of cytosine / active DNA demethylation / Helix-hairpin-Helix / DNA glycosylases / HYDROLASE-DNA complex / 5-hydroxymethyluracil / deamination / 5-methylcytosine / DNA glycosylase / stable intermediate / N-glycosidic bond

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