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Structure paper

TitleHigh-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.
Journal, issue, pagesNucleic Acids Res., Vol. 40, Page 8119-8128, Year 2012
Publish dateJan 31, 2012 (structure data deposition date)
AuthorsRusso Krauss, I. / Merlino, A. / Randazzo, A. / Novellino, E. / Mazzarella, L. / Sica, F.
External linksNucleic Acids Res. / PubMed:22669903
MethodsX-ray diffraction
Resolution1.8 - 2.05 Å
Structure data

PDB-4dih:
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of sodium ions
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4dii:
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-0G6:
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-K:
Unknown entry

Source
  • homo sapiens (human)
  • synthetic dna (others)
KeywordsHYDROLASE/HYDROLASE INHIBITOR/DNA / protein-DNA complex / serine protease / blood coagulation / aptamer / hydrolase-hydrolase inhibitor-DNA complex / serine protease fold / DNA aptamer / blood / G-quadruplex

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