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Structure paper

TitleDynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
Journal, issue, pagesJ. Biol. Chem., Vol. 287, Page 20784-20796, Year 2012
Publish dateMar 25, 2009 (structure data deposition date)
AuthorsNakamura, A. / Fujihashi, M. / Aono, R. / Sato, T. / Nishiba, Y. / Yoshida, S. / Yano, A. / Atomi, H. / Imanaka, T. / Miki, K.
External linksJ. Biol. Chem. / PubMed:22511789
MethodsX-ray diffraction
Resolution2.5 - 2.85 Å
Structure data

PDB-3a11:
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3a9c:
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3vm6:
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

Chemicals

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-RUB:
RIBULOSE-1,5-DIPHOSPHATE

ChemComp-RI2:
1,5-di-O-phosphono-alpha-D-ribofuranose

ChemComp-CL:
Unknown entry

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

Source
  • thermococcus kodakaraensis (archaea)
  • thermococcus kodakarensis (archaea)
KeywordsISOMERASE / HEXAMER / ROSSMANN FOLD / Initiation factor / COMPLEX / AMP METABOLISM / SUGAR BINDING

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